MSC Software team is developing in-house designed software for instrument control, data acquisition, processing and interpretation of MS data:
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TOF Control - software for control of MS power electronics, providing flexible adjustment and configuration of the set of units being controlled.

Convenient setting and reading of voltages and clock parameters
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Logging of control settings into spectra and mass-chromatogram files
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Automatic tuning of the instrument with looping data acquisition and electronics control
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Display of correlation between setting parameters and spectra parameters
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Script language for convenient setting of auto tune scenarios
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TOF Acquisor - Data acquisition software for real-time monitoring, compression and primary data processing

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Controlling parameters of data acquisition board (primarily Acqiris AP-100/200)
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Transferring and storing of compressed data on disk (up to 100 spectra/sec)
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Real-time monitoring of acquired spectra, ion current, mass shift; mass calibration and peak labeling
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Automatic determination of average signal per ion
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ChromaDesktop software - processing of MS, LC/MS and GC/MS data

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Multiple operations with recorded spectra - mass calibration, peak-picking, smoothing, resampling by LC time, etc.
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Calculation of wide range of analytical characteristics of the instrument: resolving power, parameters of peak shape, analysis of calibration non-linearity, analysis of mass shifts, etc.
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Two-dimensional bitmap representation of LC/MS data (in m/z-retention time axes)
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IPEX charge-state deconvolution and deisotoping
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MassPRO - simulation of isotope distribution of molecula
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Automatic determination of LC/GC peaks based on detection of peak clusters
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Automatic correction of mass calibration
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Mass-defect analysis - detecting isobars and series of chemical fragments
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Mass-defect-based filtering of data
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Analysis of single mass traces, correlations between traces, comparison of different mass-chromatograms
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Other software tools and applications
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Determination of elemental composition based on accurate mass and isotope distribution
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Special algorithms for compound identification based on accurate mass electron ionisation spectra
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Target analysis and trace compound identification tools based on User Library of accurate mass electron ionisation spectra
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Determination of peptide sequence based on MS-MS spectra